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Reindex Warning Still Showing After Full Reindex from both Admin and Shell! How can we fix this?
Reindexing each one, one at a time didn’t work starting at the bottom or at the top as long as the index mode was set to Update on Save.
What finally solved this issue was turning all of them to Manual Reindex, and starting at the bottom and reindexing each one, one at a time, ignoring any that turn red and working my way up the list. Once i reached the top, i reindexed the red ones from the top down, then turned back on the Update on Save reindex mode. Apparently Update on Save was creating a loop between those items triggering infinite reindexing that could never complete despite saying that they were reindexed and showing no errors in the logs.
Hope that helps anyone who runs into the same issue.